plotDimReductElbow: Elbow Plot for Dimentionality Reduction Result

In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq

Elbow Plot for Dimentionality Reduction Result

Description

Elbow Plot for Dimentionality Reduction Result

Usage

plotDimReductElbow(obj, point.size, point.shape, point.color, point.alpha,
  pdf.file.name, pdf.height, pdf.width, ...)

Arguments

obj	A snap object
point.size	Point size [2].
point.shape	Point shape type [19].
point.color	Point color ["red"].
point.alpha	Point transparancy level [1].
pdf.file.name	pdf file name to save the plot [NULL].
pdf.height	the height of the graphics region in inches [7].
pdf.width	the width of the graphics region in inches [7].
...	Arguments passed to plot function.

Examples

data(demo.sp);
plotDimReductElbow(demo.sp);

r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.