boxPlotFeature: Feature Enrichment Boxplot

In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq

Feature Enrichment Boxplot

Description

Feature Enrichment Boxplot

Usage

boxPlotFeature(obj, feature, outline, ylab, main, add.point, point.size,
  point.shape, point.alpha, pdf.file.name, pdf.height, pdf.width)

Arguments

obj	A snap object.
feature	Feature enrichment value for each cell.
outline	If 'outline' is not true, the outliers are not drawn (as points whereas S+ uses lines).
ylab	Name of ylab.
main	Main title.
add.point	If 'add.point' is true, scatter points will be added to the top of the boxplot.
point.size	Point size [0.5].
point.shape	Point shape type [19].
point.alpha	Point transparancy level [0.9].
pdf.file.name	pdf file name to save the plot [NULL].
pdf.height	the height of the graphics region in inches [7].
pdf.width	the width of the graphics region in inches [7].

Examples

data(demo.sp);
boxPlotFeature(demo.sp, rnorm(nrow(demo.sp)));

r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.