createGmatFromMat: Create Cell-by-Gene Matrix

In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq

Create Cell-by-Gene Matrix

Description

This function takes a snap object and gene list as input and creates cell-by-gene matrix

Usage

createGmatFromMat(obj, input.mat, genes, do.par, num.cores)

Arguments

obj	A snap object.
input.mat	Input matrix for calculating cell-by-gene matrix.
genes	A GRanges object contains the gene annotation with name as gene name.
do.par	A logical variable indicates if run this using multiple processors [TRUE].
num.cores	Number of processers to use [1].

Value

Returns a snap objects contains cell-by-gene matrix stored in "@gmat"

r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.