runHarmony: Perform batch effect using harmony

In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq

Perform batch effect using harmony

Description

Integration of single cell ATAC-seq data for batch correction using Harmony algorithm

Usage

runHarmony(obj, eigs.dim, meta_data, vars_use, ...)

Arguments

obj	A snap object
eigs.dim	A vector of the components to use in construction of the KNN graph.
meta_data	Either (1) Dataframe with variables to integrate or (2) vector with labels.
vars_use	If meta_data is dataframe, this defined which variable(s) to remove (character vector).
...	Paramters passed to Harmony

r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.