extractReads: Extract Reads By Barcodes
In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq
View source: R/snap-utilities.R
extractReads R Documentation
Extract Reads By Barcodes
Description
This function takes a barcode list and snap file as input and quickly extract reads belonging to the given barcodes.
Usage
extractReads(barcodes, files, do.par = TRUE, num.cores = 1)
Arguments
barcodes
A vector contains the selected barcodes.
files
A vector contains the snap file that barcodes belong to.
do.par
A logic variable indicates weather to run this in parallel with multiple processors.
num.cores
Number of processors to use.
Value
Returns A GenomicRanges object that contains the reads
r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.
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View source: R/snap-utilities.R
| extractReads | R Documentation |
Extract Reads By Barcodes
Description
This function takes a barcode list and snap file as input and quickly extract reads belonging to the given barcodes.
Usage
extractReads(barcodes, files, do.par = TRUE, num.cores = 1)
Arguments
barcodes |
A vector contains the selected barcodes. |
files |
A vector contains the snap file that barcodes belong to. |
do.par |
A logic variable indicates weather to run this in parallel with multiple processors. |
num.cores |
Number of processors to use. |
Value
Returns A GenomicRanges object that contains the reads
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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