arrows_plate: Draw arrows of growth phases.

In raim/platexpress: Inspection and Analysis of Microbial Growth and Gene Expression Data

Description

draw arrows of linear segments calculated by dpseg_plate or segmented_plate with local slope (growth rate) as scaling factor, optionally in well colors.

Usage

arrows_plate(
  segments,
  wells,
  col = "#000000",
  ncol = "#F81894",
  wcol,
  xlim,
  maxmu,
  minmu,
  lwd.max = 10,
  head.length = 0.02,
  add = TRUE,
  axis2 = !add,
  ...
)

Arguments

segments	a list of segmentations for each well as returned by dpseg_plate or segmented_plate
wells	subset and plot order of wells
col	default color for arrows from positive slope segments
ncol	default color for arrows from negative slope segments
wcol	well colors (named vector) for arrows and axis labels, eg. from plate layout map
xlim	correct left and right borders required for results from segmented_plate
maxmu	maximal slope (growth rate) for line width scaling
minmu	minimal slope (growth rate) for line width scaling
lwd.max	maximal line width
head.length	arrow head length, argument length to arrows
add	add to existing plot
axis2	add wells as y-axis tick labels
...	arguments passed to arrows

raim/platexpress documentation built on Jan. 18, 2022, 1:41 p.m.