bandwidthCV.2: hack of the cellGrowth package function 'bandwidthCV' to work...

In raim/platexpress: Inspection and Analysis of Microbial Growth and Gene Expression Data

Description

hack of the cellGrowth package function bandwidthCV to work with the platexpress data format, using adjusted default values TODO: select bandwidths from data$Time

Usage

bandwidthCV.2(
  data,
  yid,
  xid,
  wells,
  bandwidths = seq(0.5, 10, length.out = 30),
  nFold = 10,
  nWell = 50,
  cutoff = 0.95,
  scaleY = identity
)

Arguments

data	platexpress data set, see readPlateData
yid	data ID of the data to be converted for grofit, from data$dataIDs
xid	the x-axis to be used, defaults to the first available (usually "Time")
wells	column IDs of the data set to use, if missing all wells are used
bandwidths	see bandwidthCV
nFold	see bandwidthCV
nWell	see bandwidthCV
cutoff	see bandwidthCV
scaleY	see bandwidthCV

See Also

bandwidthCV

raim/platexpress documentation built on Jan. 18, 2022, 1:41 p.m.