data2grofit: interface to package 'grofit'

In raim/platexpress: Inspection and Analysis of Microbial Growth and Gene Expression Data

Description

data2grofit : converts platexpress data to grofit data format

Usage

data2grofit(
  data,
  yid,
  min.time,
  max.time,
  wells,
  plate,
  eid,
  dose,
  verb = TRUE
)

Arguments

data	a platexpress data set, see readPlateData
yid	data ID of the data to be converted for grofit, from data$dataIDs
min.time	minimal time of the data to be used
max.time	maximal time of the data to be used
wells	column IDs of the data set to use, if missing all wells are used
plate	plate layout map, see readPlateMap, columns of this map can be converted to grofit data annotation
eid	column IDs in the plate layout map to be used for grofit data annotation; if missing but plate is present, the columns 2 and 3 are used
dose	vector of doses in each well, used as the third column of grofit data annotation, where it can be used for dose-response calculations
verb	print messages

Details

Returns a simple list with two entries time and data, as required for grofit.

Author(s)

Rainer Machne [e-mail]

raim/platexpress documentation built on Jan. 18, 2022, 1:41 p.m.