image_plate: Plot a heatmap of 'platexpress' data.

In raim/platexpress: Inspection and Analysis of Microbial Growth and Gene Expression Data

Description

Plot a heatmap of platexpress data.

Usage

image_plate(
  data,
  yid,
  wells,
  well.norm = FALSE,
  q.cut = 0.99,
  ylab = "",
  xid,
  xlab,
  wcol,
  col = gray.colors(100, start = 1, end = 0),
  ...
)

Arguments

data	platexpress data object
yid	ID of the platexpress data to use
wells	subset or order of wells
well.norm	normalize each well
q.cut	cut values higher then this quantile for color scale
ylab	y-axis label
xid	x-axis data ID in platexpress object
xlab	x-axis label
wcol	well colors (named vector) for axis labels, eg. from plate layout map
col	color palette to use in heatmap
...	arguments passed to image

raim/platexpress documentation built on Jan. 18, 2022, 1:41 p.m.