Description Usage Arguments Value Author(s) See Also Examples
Parses a plate design file in CSV format. Rows and columns should be named as in the corresponding plate reader data files.
1 2 3 4 5 6 7 8 9 10 11 12 | readPlateMap.old(
file,
sep = "\t",
fsep = "\n",
fields,
asep,
afields,
blank.id = "blank",
nrows = 8,
formatted = FALSE,
header = TRUE
)
|
file |
text file containing the plate layout. |
sep |
column separator, as in |
fsep |
within-field separator, separating the well-specific descriptors within well fields |
fields |
names for the field descriptors |
asep |
a separator for substance:amount pairs, eg. to indicate amount
of an inducer or a nutrient, can only be used together with
argument |
afields |
field names which hold substance:amount pair information,
see argument |
blank.id |
keyword that indicates blank wells. Blank wells can be combined with other well descriptors for separate blanking |
nrows |
number of rows to expect, defaults to 8 for rows A to H in a typical 96 well plate; TODO: get rid of this and instead check for rownames? |
formatted |
indicates whether the file is already in the required format; all other paramaters but 'sep' will be ignored |
header |
logical argument indicating the presence/absence of a header row in the layout file |
a table of well content descriptors, where the first column 'wells' maps the plate map to the data files.
Rainer Machne raim@tbi.univie.ac.at
1 2 | plate.file <- system.file("extdata", "AP12_layout.csv", package = "platexpress")
plate <- readPlateMap(file=plate.file, blank.id="blank",fsep="\n", fields=c("strain","samples"))
|
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