Man pages for ramses-antibiotics/ramses-package
R Package for Antimicrobial Stewardship & Surveillance
| antibiotic_icd_indications | Common infections and indications for antimicrobial therapy |
| bridge_spell_therapy_overlap-deprecated | Create database bridge tables |
| bridge_tables | Create database bridge tables |
| ccs | Clinical Classifications Software (CCS): map to 4-character... |
| ccsr | Clinical Classifications Software Refined (CCSR): map to... |
| clinical_feature_interval | Clinical feature: number of clinical observations falling in... |
| clinical_feature_last | Clinical feature: latest clinical observation value |
| clinical_feature_mean | Clinical feature: running mean value of a clinical... |
| clinical_feature_ols_trend | Clinical feature: temporal trend of clinical observations |
| collect | Retrieve the database record of a Ramses object |
| compute | Compute the database records of a Ramses object |
| compute_DDDs | Compute Defined Daily Doses (DDDs) |
| connect_local_database | Connect to (or create) a local DuckDB database |
| create_mock_database | Create a mock database for training/demonstration purposes |
| create_therapy_episodes | Re-create therapy episodes and therapy combinations |
| download_icd10cm | Download the ICD-10-CM reference file by the US National... |
| drug_administrations | Simulated antimicrobial drug administrations |
| drug_prescriptions | Simulated antimicrobial drug prescriptions |
| Encounter | An S4 class to represent inpatient encounters |
| get_ATC_name | Look up ATC code name on the WHO website |
| import_icd | Import the International Classification of Diseases from an... |
| inpatient_diagnoses | Simulated inpatient clinical diagnoses |
| inpatient_episodes | Simulated episodes of inpatient care |
| inpatient_investigations | Simulated clinical investigation results |
| inpatient_microbiology | Simulated microbial culture and susceptibility results |
| inpatient_wards | Simulated hospital ward movements |
| load_inpatient_diagnoses | Load inpatient diagnosis records into the warehouse |
| load_inpatient_episodes | Load episodes of care records into the warehouse |
| load_inpatient_investigations | Load observations & investigations into the warehouse |
| load_inpatient_microbiology | Load microbiology cultures and susceptibilities into the... |
| load_medications | Load drug prescription records into the warehouse |
| longitudinal_table | Get the longitudinal_table |
| map_charlson_comorbidities | Map ICD-10 to Charlson comorbidities and weights |
| map_ICD10_CCS | Map ICD-10 codes to the Clinical Classifications Software... |
| map_infections_abx_indications | Map ICD-10 to common infections and antibiotic indications |
| MedicationRequest | An S4 class to represent a drug-dose medication request |
| parenteral_changes | Get parenteral antimicrobial therapy sequences |
| Patient | An S4 class to represent patients |
| patients | Simulated patients |
| Ramses-deprecated | Deprecated functions in package 'Ramses'. |
| RamsesObject | An S4 virtual class for Ramses objects |
| Ramses-package | Ramses: R Package for Antimicrobial Stewardship &... |
| reference_aware | English Adaptation of the WHO AWaRe Index |
| reference_drug_frequency | Prescription frequency abbreviations |
| reference_loinc | LOINC codes for clinical investigations and observations |
| reference_specimen_type | Laboratory specimen type reference table (SNOMED CT concepts) |
| show | Show a Ramses object |
| TherapyEpisode | An S4 class to represent episodes of antimicrobial therapy |
| therapy_table-deprecated | Get the therapy table (DEPRECATED) |
| therapy_timeline | Display an HTML antimicrobial therapy timeline |
| transitive_closure_control | Set parameters for building combination therapy identifiers... |
| validate_administrations | Validate medication administration records |
| validate_inpatient_diagnoses | Validate inpatient diagnosis records |
| validate_inpatient_episodes | Validate inpatient episode and ward movement records |
| validate_investigations | Validate records of observations & investigations |
| validate_microbiology | Validate microbial isolates & susceptibility records |
| validate_prescriptions | Validate medication prescription records |
