| .onAttach |
Source code
|
| .onLoad |
Source code
|
| ReactomeAnalysisRequest |
Man page
Source code
|
| ReactomeAnalysisResult |
Man page
|
| ReactomeAnalysisResult-class |
Man page
|
| add_dataset |
Man page
|
| add_dataset,ReactomeAnalysisRequest,DGEList-method |
Man page
|
| add_dataset,ReactomeAnalysisRequest,EList-method |
Man page
|
| add_dataset,ReactomeAnalysisRequest,ExpressionSet-method |
Man page
|
| add_dataset,ReactomeAnalysisRequest,data.frame-method |
Man page
|
| add_dataset,ReactomeAnalysisRequest,matrix-method |
Man page
|
| analyse_sc_clusters |
Man page
|
| analyse_sc_clusters,Seurat-method |
Man page
|
| analyse_sc_clusters,SingleCellExperiment-method |
Man page
|
| break_names |
Man page
Source code
|
| checkRequestValidity |
Man page
Source code
|
| check_reactome_url |
Man page
Source code
|
| convert_reactome_result |
Man page
Source code
|
| data_frame_as_string |
Man page
Source code
|
| fetch_public_data |
Man page
Source code
|
| find_public_datasets |
Man page
Source code
|
| generate_metadata |
Man page
|
| generate_metadata,data.frame-method |
Man page
|
| generate_pseudo_bulk_data |
Man page
|
| generate_pseudo_bulk_data,Seurat-method |
Man page
|
| generate_pseudo_bulk_data,SingleCellExperiment-method |
Man page
|
| get_dataset_loading_status |
Man page
Source code
|
| get_fc_for_dataset |
Man page
Source code
|
| get_is_sig_dataset |
Man page
Source code
|
| get_public_species |
Man page
Source code
|
| get_reactome_analysis_result |
Man page
Source code
|
| get_reactome_analysis_status |
Man page
Source code
|
| get_reactome_data_types |
Man page
Source code
|
| get_reactome_methods |
Man page
Source code
|
| get_result |
Man page
|
| get_result,ReactomeAnalysisResult-method |
Man page
|
| is_gsva_result |
Man page
Source code
|
| load_public_dataset |
Man page
Source code
|
| names,ReactomeAnalysisResult-method |
Man page
|
| open_reactome |
Man page
|
| open_reactome,ReactomeAnalysisResult-method |
Man page
|
| pathways |
Man page
|
| pathways,ReactomeAnalysisResult-method |
Man page
|
| perform_reactome_analysis |
Man page
Source code
|
| plot_correlations |
Man page
|
| plot_correlations,ReactomeAnalysisResult-method |
Man page
|
| plot_gsva_heatmap |
Man page
|
| plot_gsva_heatmap,ReactomeAnalysisResult-method |
Man page
|
| plot_gsva_pathway |
Man page
|
| plot_gsva_pathway,ReactomeAnalysisResult-method |
Man page
|
| plot_gsva_pca |
Man page
|
| plot_gsva_pca,ReactomeAnalysisResult-method |
Man page
|
| plot_heatmap |
Man page
|
| plot_heatmap,ReactomeAnalysisResult-method |
Man page
|
| plot_volcano |
Man page
|
| plot_volcano,ReactomeAnalysisResult-method |
Man page
|
| print,ReactomeAnalysisRequest-method |
Man page
|
| print,ReactomeAnalysisResult-method |
Man page
|
| reactome_links |
Man page
|
| reactome_links,ReactomeAnalysisResult-method |
Man page
|
| remove_dataset |
Man page
|
| remove_dataset,ReactomeAnalysisRequest-method |
Man page
|
| result_types |
Man page
|
| result_types,ReactomeAnalysisResult-method |
Man page
|
| set_method |
Man page
|
| set_method,ReactomeAnalysisRequest-method |
Man page
|
| set_parameters |
Man page
|
| set_parameters,ReactomeAnalysisRequest-method |
Man page
|
| show,ReactomeAnalysisRequest-method |
Man page
|
| show,ReactomeAnalysisResult-method |
Man page
|
| split_clustering |
Man page
Source code
|
| split_random_sce |
Man page
Source code
|
| split_subclustering_sce |
Man page
Source code
|
| split_variable |
Man page
Source code
|
| split_variable_random |
Man page
Source code
|
| split_variable_sce |
Man page
Source code
|
| start_reactome_analysis |
Man page
Source code
|
| wait_for_loading_dataset |
Man page
Source code
|
