anc_desc_table: Get ancestor-descendant relations a given rc pair

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Get ancestor-descendant relations a given rc pair

Usage

anc_desc_table(
  i = 1,
  rc_table,
  rowTerminals,
  colTerminals,
  rowDescendants,
  colDescendants
)

Arguments

i	integer: row of rc_table for extraction of ancestor and descendant rc_index relations
rc_table	see make_rc_table
rowTerminals	Indexes of terminal row tree edges
colTerminals	Indexes of terminal column tree edges
rowDescendants	List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree
colDescendants	List of descendants made from edge_registry. Element j contains all edges descendant from edge j in the column tree

Examples

# none yet - for internal dendromap use

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.