dendromap: Coarse-grain dataset, X, based on discovered lineage

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Coarse-grain dataset, X, based on discovered lineage

Usage

dendromap(X, row.tree, col.tree, ncores = NULL, maxPval = 0.001, stepsize = 10)

Arguments

X	dataset input to dendromap from which lineages were made
row.tree	phylo class object
col.tree	phylo class object
ncores	integer number of cores for parallelization
maxPval	numeric, maximum P-value of row.tree-x-col.tree edge pairs to consider
stepsize	granularity of pvals initially input to scan_Fstats

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.