get_lineage_par: Build lineage from a given rc_index, using only P <= p_thresh

Description Usage Arguments

View source: R/get_lineage_par.R

Description

Build lineage from a given rc_index, using only P <= p_thresh

Usage

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get_lineage_par(
  basal_ix,
  p_thresh = 1,
  rc_relations. = rc_relations,
  rc_table. = rc_table,
  row.tree. = row.tree,
  rowDescendants. = rowDescendants,
  colDescendants. = colDescendants
)

Arguments

basal_ix

index found in rc_table$rc_index

p_thresh

Positive numeric, threshold P-value for inclusion of rc-pairs

rc_relations
rc_table

see make_rc_table

row.tree

phylo class object

rowDescendants

List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree

colDescendants

List of descendants made from edge_registry. Element j contains all edges descendant from edge j in the column tree


reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.