scan_Fstats: Scan P-value thresholds, computing global F-statistic for...

Description Usage Arguments

View source: R/scan_Fstats.R

Description

Scan P-value thresholds, computing global F-statistic for lineages obtained at each step

Usage

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scan_Fstats(
  pvals,
  X,
  rc_table,
  rc_relations,
  rowDescendants,
  colDescendants,
  rowEdgeTips,
  colEdgeTips,
  row.tree,
  cl = NULL
)

Arguments

pvals

numeric vector containing values between 0 and 1, sorted from smallest to largest

X

dataset input to dendromap

rc_table

see make_rc_table

rc_relations

see get_rc_relations

rowDescendants

List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree

colDescendants

List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the col tree

rowEdgeTips

edge_tips for row.tree

colEdgeTips

edge_tips for col.tree

row.tree

phylo class object

cl

cluster initialized internally with dendromap


reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.