scan_Fstats: Scan P-value thresholds, computing global F-statistic for...

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Scan P-value thresholds, computing global F-statistic for lineages obtained at each step

Usage

scan_Fstats(
  pvals,
  X,
  rc_table,
  rc_relations,
  rowDescendants,
  colDescendants,
  rowEdgeTips,
  colEdgeTips,
  row.tree,
  cl = NULL
)

Arguments

pvals	numeric vector containing values between 0 and 1, sorted from smallest to largest
X	dataset input to dendromap
rc_table	see make_rc_table
rc_relations	see get_rc_relations
rowDescendants	List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree
colDescendants	List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the col tree
rowEdgeTips	edge_tips for row.tree
colEdgeTips	edge_tips for col.tree
row.tree	phylo class object
cl	cluster initialized internally with dendromap

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.