get_lineages_and_stats: Get lineages with all lineage F-statistics

Description Usage Arguments

View source: R/get_lineages_and_stats.R

Description

Get lineages with all lineage F-statistics

Usage

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get_lineages_and_stats(
  p_thresh,
  rc_table,
  rc_relations,
  rowDescendants,
  colEdgeTips,
  rowEdgeTips,
  cl = NULL
)

Arguments

p_thresh

Positive numeric, threshold P-value for inclusion of rc-pairs

rc_table

see make_rc_table

rc_relations

see get_rc_relations

rowDescendants

List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree

colEdgeTips

edge_tips for col.tree

rowEdgeTips

edge_tips for row.tree

cl

cluster initialized internally with dendromap

colDescendants

List of descendants made from edge_registry. Element j contains all edges descendant from edge j in the column tree


reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.