get_lineages_and_stats: Get lineages with all lineage F-statistics

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Get lineages with all lineage F-statistics

Usage

get_lineages_and_stats(
  p_thresh,
  rc_table,
  rc_relations,
  rowDescendants,
  colEdgeTips,
  rowEdgeTips,
  cl = NULL
)

Arguments

p_thresh	Positive numeric, threshold P-value for inclusion of rc-pairs
rc_table	see make_rc_table
rc_relations	see get_rc_relations
rowDescendants	List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree
colEdgeTips	edge_tips for col.tree
rowEdgeTips	edge_tips for row.tree
cl	cluster initialized internally with dendromap
colDescendants	List of descendants made from edge_registry. Element j contains all edges descendant from edge j in the column tree

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.