get_phylo_groups: Get list of groups defined by phylogeny

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Get list of groups defined by phylogeny

Usage

get_phylo_groups(tree)

Arguments

tree

Phylogeny

Value

list of groups and their complements, i.e. lists of groups split by each edge of the unrooted phylogeny

Examples

tr <- rtree(8)
tr$tip.label <- 1:8
par(mfrow=c(1,1))
plot.phylo(tr,use.edge.length=FALSE);edgelabels()
Grps <- get_phylo_groups(tr)

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.