rdendromap: Random dendromap object

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Random dendromap object

Usage

rdendromap(
  m = NULL,
  n = NULL,
  row.tree = NULL,
  col.tree = NULL,
  lineage_sizes = NULL,
  lambda = 3,
  n_lineages = 1,
  min.lineage.size = 2,
  simulate.dataset = FALSE,
  ...
)

Arguments

m	number of tips in row.tree
n	number of tips in col.tree
row.tree	optional phylo class input, instead of m.
col.tree	optional phylo class input, instead of n.
lineage_sizes	either single integer or integer vector of length n_lineages. Lineages will be less than or equal to lineage_sizes
lambda	positive numeric rate parameter for rpois generating lineage sizes
n_lineages	integer number of n_lineages to compute
min.lineage.size	minimum lineage size -

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.