incompatible_descendants: Find descendant rc_indexes incompatible with input rc_index

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Find descendant rc_indexes incompatible with input rc_index

Usage

incompatible_descendants(
  rc_ix,
  rc_tbl,
  rowDescendants,
  colDescendants,
  row.tree. = row.tree,
  col.tree. = col.tree
)

Arguments

rc_ix	index found in rc_tbl$rc_index
rc_tbl	see make_rc_table. Internally in dendromap, this is a trimmed version of the global rc_table
rowDescendants	List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree
colDescendants	List of descendants made from edge_registry. Element j contains all edges descendant from edge j in the column tree
row.tree	phylo class object
col.tree	phylo class object

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.