assemble_lineage: Plot dendromap object

In reptalex/dendromap: dendromap: R package for using time-scaled reference trees to scale microbial phylogenies.

Description

Plot dendromap object

Usage

assemble_lineage(
  rc_tbl,
  rc_relations. = rc_relations,
  rc_table. = rc_table,
  row.tree. = row.tree,
  rowDescendants. = rowDescendants,
  colDescendants. = colDescendants
)

Arguments

rc_tbl	see make_rc_table. Subset of rc_table
rc_relations	see get_rc_relations
rc_table	see make_rc_table
row.tree	phylo class object
rowDescendants	List of descendants made from edge_registry. Element i contains all edges descendant from edge i in the row tree
colDescendants	List of descendants made from edge_registry. Element j contains all edges descendant from edge j in the column tree

reptalex/dendromap documentation built on April 19, 2021, 5:13 a.m.