README.md

In reptalex/phylofactor: phylofactor

phylofactor: R package for phylogentic factorization of biological data

This package provides functions to extract and visualize the phylogenetic factors in biological datasets. To get started, download R and Rtools. In R, you first need to download two packages from Bioconductor:

```{r install} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install(c("Biostrings","ggtree"))

Now, you're ready to download the \code{phylofactor} packsage using \code{devtools}:

```{r install}
devtools::install_github('reptalex/phylofactor')

The help functions in this package contain a decent amount of detail for how to perform phylofactorization.

{r PhyloFactor} ? PhyloFactor ? gpf

For more detailed information, a tutorial is available online here. If you have any questions, please feel free to post issues and contact me!

reptalex/phylofactor documentation built on Feb. 28, 2024, 3:19 p.m.