pf.taxa: summarizes taxonomic composition at given factor
In reptalex/phylofactor: phylofactor
pf.taxa R Documentation
summarizes taxonomic composition at given factor
Description
summarizes taxonomic composition at given factor
Usage
pf.taxa(pf, taxonomy, factor = 1)
Arguments
pf
phylofactor object
taxonomy
taxonomy whose first column is tree tip labels in phylofactor object and whose second column is semicolon-delimited taxonomy
factor
positive integer. Which factor to summarize.
Examples
library(phylofactor)
data(FTmicrobiome)
pf <- FTmicrobiome$PF
tx <- FTmicrobiome$taxonomy
pf.taxa(pf,tx,1)
reptalex/phylofactor documentation built on Feb. 28, 2024, 3:19 p.m.
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| pf.taxa | R Documentation |
summarizes taxonomic composition at given factor
Description
summarizes taxonomic composition at given factor
Usage
pf.taxa(pf, taxonomy, factor = 1)
Arguments
pf |
phylofactor object |
taxonomy |
taxonomy whose first column is tree tip labels in phylofactor object and whose second column is semicolon-delimited taxonomy |
factor |
positive integer. Which factor to summarize. |
Examples
library(phylofactor)
data(FTmicrobiome)
pf <- FTmicrobiome$PF
tx <- FTmicrobiome$taxonomy
pf.taxa(pf,tx,1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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