findWinner: Internal PhyloRegression function for finding the winning...

In reptalex/phylofactor: phylofactor

Internal PhyloRegression function for finding the winning edge.

Description

Internal PhyloRegression function for finding the winning edge.

Usage

findWinner(nset, tree_map, treeList, treetips, contrast.fcn = NULL,
  choice, method = "glm", frmla = NULL, xx = NULL,
  choice.fcn = NULL, ...)

Arguments

nset	set of nodes
tree_map	mapping cumulative number of nodes in treeList, used to map elements of nset to their appropriate tree in treeList.
treeList	list containing disjoint trees from phylofactor / PhyCA
treetips	number of tips in each tree
contrast.fcn	See PhyloFactor or example functions BalanceContrast, amalgamate
choice	string indicating how we choose the winner. Must be either 'var', 'F', or 'phyca'
method	See PhyloFactor
frmla	Formula for glm. See PhyloFactor for more details.
xx	data frame containing non-ILR (Data) variables used in frmla
choice.fcn	See PhyloFactor
...	optional input arguments to glm

reptalex/phylofactor documentation built on Feb. 28, 2024, 3:19 p.m.