OTUtoTaxa: Input OTUs and outputs their taxonomic detail, optinally...
In reptalex/phylofactor: phylofactor
OTUtoTaxa R Documentation
Input OTUs and outputs their taxonomic detail, optinally trimmed to their common taxonomic levels.
Description
Input OTUs and outputs their taxonomic detail, optinally trimmed to their common taxonomic levels.
Usage
OTUtoTaxa(otus, Taxonomy, common.name = F, uniques = F,
minimum.level = Inf)
Arguments
otus
Species IDs found in first column of Taxonomy
Taxonomy
Taxonomy whose first column has OTUs/species IDs and whose second column has greengenes-compatible taxonomic strings
common.name
Logical indicating whether or not to trim the output to the longest common prefix in the taxonomic strings of all otus
uniques
Logical whether or not to trim list to only unique entries
minimum.level
integer indicating the minimum number of taxonomic levels to include starting from the coarsest (Left-most) taxonomic level.
reptalex/phylofactor documentation built on Feb. 28, 2024, 3:19 p.m.
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| OTUtoTaxa | R Documentation |
Input OTUs and outputs their taxonomic detail, optinally trimmed to their common taxonomic levels.
Description
Input OTUs and outputs their taxonomic detail, optinally trimmed to their common taxonomic levels.
Usage
OTUtoTaxa(otus, Taxonomy, common.name = F, uniques = F,
minimum.level = Inf)
Arguments
otus |
Species IDs found in first column of Taxonomy |
Taxonomy |
Taxonomy whose first column has OTUs/species IDs and whose second column has greengenes-compatible taxonomic strings |
common.name |
Logical indicating whether or not to trim the output to the longest common prefix in the taxonomic strings of all otus |
uniques |
Logical whether or not to trim list to only unique entries |
minimum.level |
integer indicating the minimum number of taxonomic levels to include starting from the coarsest (Left-most) taxonomic level. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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