Files in reptalex/phylofactor
phylofactor

..Rcheck/00check.log
..Rcheck/00install.out
.Rbuildignore
.gitignore
.gitignore.txt
.travis.yml
DESCRIPTION
NAMESPACE
R/ColorTaxa.R R/GAM.R R/HGTplot.R R/OTUtoTaxa.R R/PhyCA.R R/PhyloFactor.R R/PhyloRegression.R R/TaxaSplit.R R/VAR.R R/amalg.R R/binPhyloPlot.R R/binTaxa.R R/bins.R R/checkData.R R/clo.R R/compData.R R/crossVmap.R R/data.R R/decideMethod.R R/extractEdges.R R/findInterruptions.R R/findWinner.R R/findunsplitgroups.R R/gMean.R R/getAssignedGroups.R R/getFactoredEdges.R R/getFactoredEdgesPAR.R R/getLabelledGrp.R R/getNewGroups.R R/getObjective.R R/getPhyloGroups.R R/getStats.R R/gpf.R R/ilrInv.R R/ilrvec.R R/listTaxa.R R/logData.R R/mAggregation.R R/objectiveFunction.R R/pf.BINprojection.R R/pf.ILRprojection.R R/pf.flow.R R/pf.getPhyloGroups.R R/pf.nullsim.R R/pf.plot.R R/pf.predict.R R/pf.summary.R R/pf.tidy.R R/pf.tree.R R/pglm.R R/phyca.tidy.R R/phylo.frame.to.matrix.R R/phyloFcluster.R R/phylobin.R R/replaceZeros.R R/simHGT.R R/trimTree.R R/twoSampleFactor.R R/uniqueTaxa.R R/updateBinList.R R/updateTreeList.R R/whichBinSplit.R README.md
_config.yml
data/FTmicrobiome.rda
inst/CITATION
inst/tests/testthat.R inst/tests/testthat/test-10twoSampleFactor.R inst/tests/testthat/test-1phylofactor.R inst/tests/testthat/test-2phylofactor-multiple-regression.R inst/tests/testthat/test-3phylofactor-custom-objective-functions.R inst/tests/testthat/test-4phylofactor-SitePrediction-binomial-regression.R inst/tests/testthat/test-5phyca.R inst/tests/testthat/test-6getFactoredEdges.R inst/tests/testthat/test-7crossVmap.R inst/tests/testthat/test-8pfnullsim.R inst/tests/testthat/test-9pfplotting.R man/ColorTaxa.Rd man/FTmicrobiome.Rd man/GAM.Rd man/HGTplot.Rd man/OTUtoTaxa.Rd man/PhyCA.Rd man/PhyloFactor.Rd man/PhyloRegression.Rd man/TaxaSplit.Rd man/VAR.Rd man/amalg.ILR.Rd man/binPhyloPlot.Rd man/binTaxa.Rd man/bins.Rd man/checkData.Rd man/clo.Rd man/compData.Rd man/crossVmap.Rd man/decideMethod.Rd man/extractEdges.Rd man/find.unsplit.Grps.Rd man/findInterruptions.Rd man/findWinner.Rd man/gMean.Rd man/getAssignedGroups.Rd man/getFactoredEdges.Rd man/getFactoredEdgesPAR.Rd man/getLabelledGrp.Rd man/getNewGroups.Rd man/getObjective.Rd man/getPhyloGroups.Rd man/getStats.Rd man/gpf.Rd man/ilrInv.Rd man/ilrvec.Rd man/listTaxa.Rd man/logData.Rd man/mAggregation.Rd man/objectiveFunction.Rd man/pf.BINprojection.Rd man/pf.ILRprojection.Rd man/pf.flow.Rd man/pf.getPhyloGroups.Rd man/pf.nullsim.Rd man/pf.plot.Rd man/pf.predict.Rd man/pf.summary.Rd man/pf.tidy.Rd man/pf.tree.Rd man/pglm.Rd man/phyca.tidy.Rd man/phylo.frame.to.matrix.Rd man/phyloFcluster.Rd man/phylobin.Rd man/replaceZeros.Rd man/simHGT.Rd man/trimTree.Rd man/twoSampleFactor.Rd man/uniqueTaxa.Rd man/updateBinList.Rd man/updateTreeList.Rd man/whichBinSplit.Rd
src-i386/bifurcations.c
src-i386/phylofactor.dll
src-i386/phylofactor_init.c
src-x64/bifurcations.c
src-x64/phylofactor.dll
src-x64/phylofactor_init.c
src/bifurcations.c
src/phylofactor_init.c
reptalex/phylofactor documentation built on Dec. 13, 2017, 9:16 p.m.