pvDeviance: obtains deviance for partitioning variables - default...

In reptalex/phylofactor: phylofactor

obtains deviance for partitioning variables - default objective function for gpf

Description

obtains deviance for partitioning variables - default objective function for gpf

Usage

pvDeviance(model, grp, tree, PartitioningVariables = "", model.fcn,
  phyloData, ...)

Arguments

model	model, such as glm, lm, nls, gam, which can be put into anova.
grp	two-member list of integers, see getPhyloGroups.
tree	phylo class object
PartitioningVariables	string - used to find partitioning variables in anova table.
model.fcn	input model function for gpf
phyloData	Data frame passed to model.fcn, used here to compute null deviance without phylo factors in gam objects
...	additional arguments passed to model.fcn passed down from the input to gpf

reptalex/phylofactor documentation built on Feb. 28, 2024, 3:19 p.m.