Files in ressomlab/INDEED
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection
.gitignore
DESCRIPTION
INDEED.Rproj
LICENSE
LICENSE.md
NAMESPACE
R/INDEED.R
R/data.R
R/helper_function.R
R/network_display.R
R/non_partial_cor.R
R/partial_cor.R
R/select_rho_partial.R
README.Rmd
README.md
data/Met_GU.rda
data/Met_Group_GU.rda
data/Met_name_GU.rda
data/pvalue_M_GU.rda
figure/network_display_correlation.png
figure/network_display_partial.png
figure/rho-selection-1.png
inst/INDEED_result.csv
inst/INDEED_result_pearson.csv
inst/INDEED_result_spearman.csv
inst/pvalue_M_GU.csv
man/INDEED.Rd
man/Met_GU.Rd
man/Met_Group_GU.Rd
man/Met_name_GU.Rd
man/choose_rho.Rd
man/compute_cor.Rd
man/compute_dns.Rd
man/compute_edge_weights.Rd
man/compute_par.Rd
man/compute_pvalue_edge.Rd
man/compute_pvalue_edge_fdr.Rd
man/loglik_ave.Rd
man/network_display.Rd
man/non_partial_cor.Rd
man/partial_cor.Rd
man/permutation_cor.Rd
man/permutation_pc.Rd
man/permutation_thres.Rd
man/pvalue_M_GU.Rd
man/pvalue_logit.Rd
man/select_rho_partial.Rd
tests/testthat.R
tests/testthat/test.R
vignettes/Introduction_to_INDEED.R
vignettes/Introduction_to_INDEED.Rmd
vignettes/Introduction_to_INDEED.html
