View source: R/select_rho_partial.R

select_rho_partial | R Documentation |

A method that integrates differential expression (DE) analysis and differential network (DN) analysis to select biomarker candidates for cancer studies. select_rho_partial is the pre-processing step for INDEED partial differential analysis.

select_rho_partial( data = NULL, class_label = NULL, id = NULL, error_curve = TRUE )

`data` |
This is a p*n dataframe that contains the expression levels for all biomolecules and samples. |

`class_label` |
This is a 1*n dataframe that contains the class label with 0 for group 1 and 1 for group 2. |

`id` |
This is a p*1 dataframe that contains the ID for each biomolecule. |

`error_curve` |
This is a boolean value indicating whether to plot the error curve (TRUE) or not (FALSE). The default is TRUE. |

A list of processed data for the next step, and an error curve to select optimal rho value for graphical lasso.

select_rho_partial(data = Met_GU, class_label = Met_Group_GU, id = Met_name_GU, error_curve = TRUE)

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