An Implementation of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection

choose_rho | Draw error curve |

compute_cor | Compute the correlation |

compute_dns | Calculate differential network score |

compute_par | Compute the partial correlation |

INDEED | INDEED: A package for biomarker candidate prioritization. |

loglik_ave | Create log likelihood error function |

Met_Group_GU | Group label. |

Met_GU | GU CIRR and GU HCC combined . |

Met_name_GU | KEGG ID |

non_partial_cor | Non-partial correlaton analysis |

partial_cor | Data preprocessing for partial correlaton analysis |

permutation_cor | Permutations to build differential network using correlation |

permutation_pc | Permutations to build differential network using partial... |

permutation_thres | Calculate the positive and negative threshold based on the... |

pvalue_logit | Obtain p-values using logistic regression |

pvalue_M_GU | P-values obtained by differential expression (DE) analysis. |

select_rho_partial | Data preprocessing for partial correlaton analysis |

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