Man pages for ressomlab/INDEED
An Implementation of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection

choose_rhoDraw error curve
compute_corCompute the correlation
compute_dnsCalculate differential network score
compute_parCompute the partial correlation
INDEEDINDEED: A package for biomarker candidate prioritization.
loglik_aveCreate log likelihood error function
Met_Group_GUGroup label.
Met_GUGU CIRR and GU HCC combined .
Met_name_GUKEGG ID
non_partial_corNon-partial correlaton analysis
partial_corData preprocessing for partial correlaton analysis
permutation_corPermutations to build differential network using correlation
permutation_pcPermutations to build differential network using partial...
permutation_thresCalculate the positive and negative threshold based on the...
pvalue_logitObtain p-values using logistic regression
pvalue_M_GUP-values obtained by differential expression (DE) analysis.
select_rho_partialData preprocessing for partial correlaton analysis
ressomlab/INDEED documentation built on Oct. 2, 2018, 10:10 a.m.