Man pages for ressomlab/INDEED
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection

choose_rhoDraw error curve
compute_corCompute the correlation
compute_dnsCalculate the differential network score
compute_edge_weightsCompute edge weights
compute_parCompute the partial correlation
compute_pvalue_edgeCompute p-value for edges
compute_pvalue_edge_fdrCompute fdr p-value for edges
INDEEDINDEED: A network-based method for cacner biomarker...
loglik_aveCreate log likelihood error
Met_Group_GUGroup label.
Met_GUGU cirrhosis (CIRR) and GU hepatocellular carcinoma (HCC)...
Met_name_GUKEGG ID
network_displayInteractive Network Visualization
non_partial_corNon-partial correlation analysis
partial_corPartial correlation analysis
permutation_corPermutations to build a differential network based on...
permutation_pcPermutations to build differential network based on partial...
permutation_thresCalculate the positive and negative thresholds based on the...
pvalue_logitObtain p-values using logistic regression
pvalue_M_GUP-values obtained by differential expression (DE) analysis.
select_rho_partialData preprocessing for partial correlation analysis
ressomlab/INDEED documentation built on Aug. 3, 2022, 4:45 p.m.