methylscaper is an R package for processing and visualizing data jointly profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe, etc.). The package supports both single-cell and single-molecule data, and a common interface for jointly visualizing both data types through the generation of ordered representational methylation-state matrices. The Shiny app allows for an interactive seriation process of refinement and re-weighting that optimally orders the cells or DNA molecules to discover methylation patterns and nucleosome positioning.
Package details |
|
---|---|
Bioconductor views | DNAMethylation Epigenetics NucleosomePositioning Sequencing SingleCell Visualization |
Maintainer | |
License | GPL-2 |
Version | 1.13.3 |
URL | https://github.com/rhondabacher/methylscaper/ |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.