Man pages for roszenil/chromploid
Chromosome Number and Ploidy Evolution Models
| bichrom_dataset | Cleans and organizes dataset for BiChroM analyses |
| bichrom_optim | Calculates the maximum likelihood estimate and the value of... |
| chromploid | chromploid A package that calculates likelihood for... |
| chromploid_nllike | Calculates the negative log-likelihood of a chromosome or... |
| chromploid_sim.char | Simulates a a sample of chromosome number or ploidy change... |
| ploidevol_dataset | Cleans and organizes dataset for PloidEvol analyses |
| Q_bibichrom | Calculates Q-matrix for bivariate profile likelihoods for... |
| Q_bichrom | Calculates Q-matrix for BiChroM model |
| Q_bichromlinear | Calculates Q-matrix for BiChroM model |
| Q_biploidevol | Calculates Q-matrix for bivariate profile likelihoods for... |
| Q_chromevolM2 | Calculates Q-matrix for chromevol M2 model (beta version) |
| Q_chromevolM3 | Calculates Q-matrix for chromevol M3 model (beta version) |
| Q_ploidevol | Calculates Q-matrix for Ploidevol model |
| Q_reducedbichrom | Calculates a Q matrix for reduced BiChroM model |
| Q_unibichrom | Calculates Q-matrix for univariate profile likelihoods from... |
| Q_uniploidevol | Calculates Q-matrix for univariate profile likelihoods for... |
| stationary_ploidevol | Calculates stationary distribution for root under Ploidevol... |
