Q_chromevolM3: Calculates Q-matrix for chromevol M3 model (beta version)
In roszenil/chromploid: Chromosome Number and Ploidy Evolution Models
Description
Usage
Arguments
Details
Value
Description
Calculates Q-matrix for chromevol M3 model (beta version)
Usage
1
Q_chromevolM3(log.theta, size)
Arguments
log.theta
vector of size 4 indicating parameters in ln scale for chromevol M3 the order of the parameters is (lambda,delta, rho, mu) (in that order, lambda=+1, delta=-1, rho=x2, mu=x1.5)
size
Maximum number of chromosomes in the sample (recommended no more than 40)
Details
Q_chomevolM3 determines the Q-matrix for a model of chromosome number change with duplications, dysploidy, and demiploidy.
Value
Q a sparse matrix of size (size+10)
roszenil/chromploid documentation built on May 27, 2019, 11:42 p.m.
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Description Usage Arguments Details Value
Description
Calculates Q-matrix for chromevol M3 model (beta version)
Usage
1 | Q_chromevolM3(log.theta, size)
|
Arguments
log.theta |
vector of size 4 indicating parameters in ln scale for chromevol M3 the order of the parameters is (lambda,delta, rho, mu) (in that order, lambda=+1, delta=-1, rho=x2, mu=x1.5) |
size |
Maximum number of chromosomes in the sample (recommended no more than 40) |
Details
Q_chomevolM3 determines the Q-matrix for a model of chromosome number change with duplications, dysploidy, and demiploidy.
Value
Q a sparse matrix of size (size+10)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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