Description Usage Arguments Value
Calculates Q-matrix for bivariate profile likelihoods for Ploidevol model
1 | Q_biploidevol(log.pars, log.theta0, param.name)
|
log.pars |
vector of size 4 indicating values in ln of nuisance parameters (excluding the ones of interest for the profile likelihood) |
log.theta0 |
vector of size 2 indicating values parameters of interest in BiChroM. Options are (alpha, beta, delta, epsilon, rho, omega) |
param.name |
vector of size 2 indicating the names of parameters of interest. E.g. c("alpha",beta") |
Q a sparse matrix of size 11x11
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