Q_biploidevol: Calculates Q-matrix for bivariate profile likelihoods for...

Description Usage Arguments Value

View source: R/Q_biploidevol.R

Description

Calculates Q-matrix for bivariate profile likelihoods for Ploidevol model

Usage

1
Q_biploidevol(log.pars, log.theta0, param.name)

Arguments

log.pars

vector of size 4 indicating values in ln of nuisance parameters (excluding the ones of interest for the profile likelihood)

log.theta0

vector of size 2 indicating values parameters of interest in BiChroM. Options are (alpha, beta, delta, epsilon, rho, omega)

param.name

vector of size 2 indicating the names of parameters of interest. E.g. c("alpha",beta")

Value

Q a sparse matrix of size 11x11


roszenil/chromploid documentation built on March 19, 2018, 4:42 p.m.