Description Usage Arguments Details Value

Calculates Q-matrix for BiChroM model

1 | ```
Q_bichrom(log.theta, size)
``` |

`log.theta` |
vector of size 10 indicating parameters in ln scale for BiChoM the order of the parameters is (lambda0, lambda1, mu0, mu1, rho0, rho1, q01,q10, e0, e1) |

`size` |
Maximum number of chromosomes in the sample (recommended no more than 50, states larger than that should be coded as 51) |

Q_bichrom determines the Q-matrix for a model of chromosome number change associated with a binary state with traits coded as 0 or 1.

Q a sparse matrix of size 2*(size+1)

roszenil/chromploid documentation built on March 19, 2018, 4:42 p.m.

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