ploidevol_dataset: Cleans and organizes dataset for PloidEvol analyses
In roszenil/chromploid: Chromosome Number and Ploidy Evolution Models
Description
Usage
Arguments
Details
Value
See Also
Description
Cleans and organizes dataset for PloidEvol analyses
Usage
1
ploidevol_dataset(ploidies, size = 12)
Arguments
ploidies
a vector with ploidy values, and taxon row.names
size
maximum ploidy value allow for analyses, by default is 12. See details for more information.
Details
This function cleans and organizes a vector of ploidies assuming ploidy values range from 2x to 12x. It deletes values larger than 12x and redefines ploidy values as value-1 since Q_ploidevol indices range from 1 to 11. If larger ploidy values are needed user needs to specify own Q.FUN to use in negloglikelihood.
Value
ploidy.dataset a data frame whose first column is taxon name and second column the ploidy values-1. Saves the data frame as .txt file for future references. See details.
See Also
roszenil/chromploid documentation built on May 27, 2019, 11:42 p.m.
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Description Usage Arguments Details Value See Also
Description
Cleans and organizes dataset for PloidEvol analyses
Usage
1 | ploidevol_dataset(ploidies, size = 12)
|
Arguments
ploidies |
a vector with ploidy values, and taxon row.names |
size |
maximum ploidy value allow for analyses, by default is 12. See details for more information. |
Details
This function cleans and organizes a vector of ploidies assuming ploidy values range from 2x to 12x. It deletes values larger than 12x and redefines ploidy values as value-1 since Q_ploidevol indices range from 1 to 11. If larger ploidy values are needed user needs to specify own Q.FUN to use in negloglikelihood.
Value
ploidy.dataset a data frame whose first column is taxon name and second column the ploidy values-1. Saves the data frame as .txt file for future references. See details.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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