Q_uniploidevol: Calculates Q-matrix for univariate profile likelihoods for...
In roszenil/chromploid: Chromosome Number and Ploidy Evolution Models
Description
Usage
Arguments
Value
Description
Calculates Q-matrix for univariate profile likelihoods for Ploidevol model
Usage
1
Q_uniploidevol(log.pars, log.theta0, param.name)
Arguments
log.pars
vector of size 5 indicating values in ln of nuisance parameters (excluding one of interest for the profile likelihood)
log.theta0
vector of size 1 indicating values parameters of interest in BiChroM. Options are (alpha, beta,delta, epsilon, rho, omega)
param.name
vector of size 1 indicating the names of parameters of interest. E.g. "epsilon"
Value
Q a sparse matrix of size 11x11
roszenil/chromploid documentation built on May 27, 2019, 11:42 p.m.
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Description Usage Arguments Value
Description
Calculates Q-matrix for univariate profile likelihoods for Ploidevol model
Usage
1 | Q_uniploidevol(log.pars, log.theta0, param.name)
|
Arguments
log.pars |
vector of size 5 indicating values in ln of nuisance parameters (excluding one of interest for the profile likelihood) |
log.theta0 |
vector of size 1 indicating values parameters of interest in BiChroM. Options are (alpha, beta,delta, epsilon, rho, omega) |
param.name |
vector of size 1 indicating the names of parameters of interest. E.g. "epsilon" |
Value
Q a sparse matrix of size 11x11
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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