Q_unibichrom: Calculates Q-matrix for univariate profile likelihoods from...
In roszenil/chromploid: Chromosome Number and Ploidy Evolution Models
Description
Usage
Arguments
Value
Description
Calculates Q-matrix for univariate profile likelihoods from BiChroM model
Usage
1
Q_unibichrom(log.pars, log.theta0, size, param.name)
Arguments
log.pars
vector of size 9 indicating values in ln of nuisance parameters (excluding one of interest for the profile likelihood)
log.theta0
vector of size 1 indicating values parameters of interest in BiChroM. Options are (lambda0, lambda1, mu0, mu1, rho0, rho1, q01,q10, e01, e10)
size
Maximum number of chromosomes in the sample (recommended no more than 50, states larger than that should be coded as 51)
param.name
vector of size 1 indicating the names of parameters of interest. E.g. "rho0"
Value
Q a sparse matrix of size 2*(size+1)
roszenil/chromploid documentation built on May 27, 2019, 11:42 p.m.
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Description Usage Arguments Value
Description
Calculates Q-matrix for univariate profile likelihoods from BiChroM model
Usage
1 | Q_unibichrom(log.pars, log.theta0, size, param.name)
|
Arguments
log.pars |
vector of size 9 indicating values in ln of nuisance parameters (excluding one of interest for the profile likelihood) |
log.theta0 |
vector of size 1 indicating values parameters of interest in BiChroM. Options are (lambda0, lambda1, mu0, mu1, rho0, rho1, q01,q10, e01, e10) |
size |
Maximum number of chromosomes in the sample (recommended no more than 50, states larger than that should be coded as 51) |
param.name |
vector of size 1 indicating the names of parameters of interest. E.g. "rho0" |
Value
Q a sparse matrix of size 2*(size+1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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