Files in rscharpf/MinimumDistance
A Package for De Novo CNV Detection in Case-Parent Trios
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/coercion-methods.R
R/datasets.R
R/defunct.R
R/functions.R
R/generator-funs.R
R/help.R
R/lattice-methods.R
R/mad-methods.R
R/methods-AnnotatedDataFrame.R
R/methods-AssayData.R
R/methods-FileViews.R
R/methods-FilterParamMD.R
R/methods-ILimit.R
R/methods-MDRanges.R
R/methods-MinDistExperiment.R
R/methods-MinDistGRanges.R
R/methods-MinDistParam.R
R/methods-MinDistPosterior.R
R/methods-ParentOffspring.R
R/methods-ParentOffspringList.R
R/methods-Pedigree.R
R/methods-PennParam.R
R/methods-ShallowSimpleList.R
R/methods-SummarizedExperiment.R
R/methods-TrioSet.R
R/methods-TrioSetList.R
R/methods-ff_array.R
R/methods-grid.R
R/methods-list.R
R/methods-matrix.R
R/segment2-methods.R
R/utils.R
R/zzz.R
data/md_exp.rda
data/md_gr.rda
data/trioSetListExample.rda
inst/NEWS.Rd
inst/extdata/F.txt
inst/extdata/M.txt
inst/extdata/O.txt
inst/extdata/O1.txt
inst/extdata/baf.rda
inst/extdata/exampleFiles.R
inst/extdata/logRratio.rda
inst/extdata/md_granges.rds
inst/extdata/mdgr.rds
inst/extdata/pedigreeInfo.rda
inst/extdata/pennCNV_MendelianProb.rda
inst/extdata/sample.sheet.rda
inst/extdata/trioSet12023chr12.rda
inst/scripts/Affy2.R
inst/scripts/Discordance.Rnw
inst/scripts/Sweave.sty
inst/scripts/affy.R
inst/scripts/cleft_notParallel.Rnw
inst/scripts/logR.baf.rda
inst/scripts/runDiscordance.R
inst/unitTests/.gitignore
inst/unitTests/Makefile
inst/unitTests/test_FilterParam.R
inst/unitTests/test_MinDistExperiment.R
inst/unitTests/test_Pedigree-class.R
inst/unitTests/test_PedigreeViews.R
inst/unitTests/test_SnpArrayExperiment.R
inst/unitTests/test_TrioSetList.R
inst/unitTests/test_calculateMindist.R
inst/unitTests/test_callDenovoSegments.R
inst/unitTests/test_few_markers.R
inst/unitTests/test_posteriorCalls.R
inst/unitTests/test_quads.R
inst/unitTests/test_rdsViews.R
inst/unitTests/test_splitsForCBS.R
man/DNAcopyParam.Rd
man/Defunct.Rd
man/Deprecated.Rd
man/FilterParamMD-class.Rd
man/FilterParamMD.Rd
man/MAP.Rd
man/MAP2.Rd
man/MDRanges-class.Rd
man/MinDistExperiment-class.Rd
man/MinDistExperiment.Rd
man/MinDistGRanges-class.Rd
man/MinDistGRanges.Rd
man/MinDistParam-class.Rd
man/MinDistParam.Rd
man/MinDistPosterior-class.Rd
man/MinimumDistance.Rd
man/ParentOffspring-class.Rd
man/ParentOffspringList-class.Rd
man/Pedigree-class.Rd
man/Pedigree.Rd
man/PennParam.Rd
man/TrioSet-class.Rd
man/TrioSet.Rd
man/TrioSetList-class.Rd
man/TrioSetList.Rd
man/TrioSetListLD.Rd
man/acf2.Rd
man/calculateMindist.Rd
man/coercion-methods.Rd
man/denovo.Rd
man/exampleTrioSetList.Rd
man/filterExperiment.Rd
man/mad2.Rd
man/mdLegend.Rd
man/md_exp.Rd
man/md_gr.Rd
man/mindist.Rd
man/nMAD.Rd
man/pedigreeGrid.Rd
man/pedigreeName.Rd
man/pedigreeViewports.Rd
man/plotDenovo.Rd
man/range-ILimit-method.Rd
man/segment2.Rd
tests/doRUnit.R
vignettes/.gitignore
vignettes/MinimumDistance.Rnw
vignettes/MinimumDistance.bib
