md_gr: An example 'MinDistGRanges' object

In rscharpf/MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

Prior to inferring de novo trio copy number states, the log R ratios are segmented independently for each individual in a ParentOffsping class. The segmentation results are recorded in separate GRanges objects for the parents. For segmentation of the offspring log R ratios and the minimum distance, the segments are stored in separate GRangesList objects. For convenience, these GRanges, GRangesList, and pedigree information are bound in a single container referred to as a MinDistGRanges object. The example MinDistGRanges object provided in this package was obtained from the segmentation of the data stored in the example MinDistExperiment object.

Format

a MinDistGRanges object

rscharpf/MinimumDistance documentation built on Sept. 16, 2019, 4:12 a.m.