MinDistExperiment-class: Class and methods for MinDistExperiment

In rscharpf/MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

Class and methods for MinDistExperiment

Usage

## S4 method for signature 'MinDistExperiment'
show(object)

## S4 method for signature 'MinDistExperiment'
pedigree(object)

## S4 replacement method for signature 'MinDistExperiment'
pedigree(object) <- value

## S4 method for signature 'MinDistExperiment'
mindist(object)

## S4 replacement method for signature 'MinDistExperiment,ANY'
mindist(object) <- value

## S4 method for signature 'MinDistExperiment,ANY,ANY,ANY'
x[i, j, ..., drop = FALSE]

## S4 method for signature 'MinDistExperiment'
offspring(object)

## S4 method for signature 'MinDistExperiment'
father(object)

## S4 method for signature 'MinDistExperiment'
mother(object)

## S4 method for signature 'MinDistExperiment'
segment2(object, param = MinDistParam())

## S4 method for signature 'RangedSummarizedExperiment'
father(object)

## S4 method for signature 'RangedSummarizedExperiment'
mother(object)

## S4 method for signature 'RangedSummarizedExperiment'
offspring(object)

Arguments

object	a MinDistExperiment object
value	a ParentOffspring object
x	a MinDistExperiment object
i	a numeric-vector for indexing the rows (optional)
j	a numeric-vector for indexing the columns (optional)
...	additional arguments propogated to subsetting methods for RangedSummarizedExperiment
drop	logical. Whether to simplify a one-row or one-column matrix to a vector. In most cases, this should always be FALSE.
param	a MinDistParam object

Slots

mindist

a matrix

pedigree

a ParentOffspring object

rscharpf/MinimumDistance documentation built on Sept. 16, 2019, 4:12 a.m.