filterExperiment: Methods for filtering MinDistExperiment objects

In rscharpf/MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

Filter a MinDistExperiment object to exclude markers with missing values in the low-level summaries, exclude markers that lie in segments (granges argument) with small minimum distance values (unlikely to be de novo)

Usage

filterExperiment(object, granges, param)

## S4 method for signature 'MinDistExperiment,GRanges'
filterExperiment(object, granges,
  param)

## S4 method for signature 'MinDistExperiment,GRangesList'
filterExperiment(object, granges,
  param)

## S4 method for signature 'MinDistExperiment,MinDistGRanges'
filterExperiment(object,
  granges, param)

Arguments

object	A MinDistExperiment
granges	A GRanges, GRangesList, or MinDistGRanges object
param	a MinDistParam object

Value

a MinDistExperiment

rscharpf/MinimumDistance documentation built on Sept. 16, 2019, 4:12 a.m.