DNAcopyParam: Constructor for DNAcopyParam class
In rscharpf/MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios
Description
Usage
Arguments
See Also
Examples
View source: R/methods-MinDistParam.R
Description
Creates an instance of a parameter class for circular binary
segmentation of the minimum distance and the log R ratios.
Parameters in this object are passed to the segment function
in the package DNAcopy.
Usage
1
2
DNAcopyParam(alpha = 0.01, min.width = 2L, undo.splits = c("none",
"prune", "sdundo"), undo.SD = 3)
Arguments
alpha
see segment
min.width
see segment
undo.splits
see segment
undo.SD
see segment
See Also
Examples
1
2
segment_params <- DNAcopyParam(alpha=0.01)
params <- MinDistParam(dnacopy=segment_params)
rscharpf/MinimumDistance documentation built on Sept. 16, 2019, 4:12 a.m.
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Description Usage Arguments See Also Examples
View source: R/methods-MinDistParam.R
Description
Creates an instance of a parameter class for circular binary
segmentation of the minimum distance and the log R ratios.
Parameters in this object are passed to the segment function
in the package DNAcopy.
Usage
1 2 | DNAcopyParam(alpha = 0.01, min.width = 2L, undo.splits = c("none",
"prune", "sdundo"), undo.SD = 3)
|
Arguments
alpha |
see |
min.width |
see |
undo.splits |
see |
undo.SD |
see |
See Also
Examples
1 2 | segment_params <- DNAcopyParam(alpha=0.01)
params <- MinDistParam(dnacopy=segment_params)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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