TrioSet: Deprecated constructor for 'TrioSet' class

In rscharpf/MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

The TrioSet class has been deprecated and may be removed in a future release.

Usage

TrioSet(pedigreeData = Pedigree(), sample.sheet, row.names = NULL, lrr,
  baf, featureData, cdfname, drop = TRUE, mindist = NULL,
  genome = c("hg19", "hg18"))

Arguments

pedigreeData	an object of class Pedigree
sample.sheet	a data.frame containing metadata on the trios
row.names	a character vector providing row identifiers for the sample.sheet argument that match the names of the trios in the pedigreeData argument.
lrr	a matrix of log R ratios
baf	a matrix of B allele frequencies
featureData	a GenomeAnnotatedDataFrame object for the SNPs/nonpolymorphic markers
cdfname	character string indicating the annotation package used to extract physical position and chromosome of markers
drop	logical. When FALSE, the dimnames on the log R ratio and BAF arrays is set to NULL
mindist	can be either NULL or a matrix of the minimum distance
genome	character string providing the UCSC genome build

Value

TrioSet

rscharpf/MinimumDistance documentation built on Sept. 16, 2019, 4:12 a.m.