Man pages for rystanley/genepopedit
Simple and flexible manipulation of genomic data
| AlleleFreq | Calculate the major allele |
| AlleleFreqLoci | Calculate allele frequency for a given allele |
| alleleotype_genepop | Alleleotype -> GENEPOP format |
| common_string | Identify common string sequence |
| filename_check | filename_check |
| frequencies | Calculate allele frequencies - sub-function of... |
| genepop_allelefreq | Explore population specific allele frequencies. |
| genepop_assigner | Convert Genepop to assigner format. |
| genepop_bgc | Convert Genepop to Bayesian Genomic Clines (BGC) format. |
| genepop_clean | Fixes common formatting problems using PGDspider. |
| genepop_colony | Convert Genepop to Colony format. |
| GenePopData | Documentation for the dataset used inside genepopedit This... |
| genepop_detective | Explore Genepop data structure. |
| genepop_filter_maf | Filters genepop file for MAF |
| genepop_flattend | Flatten Genepop to dataframe |
| genepop_fstat | Convert Genepop to FSTAT format. |
| genepop_GSIsim | Convert Genepop to GSI sim format. |
| genepop_hzar | Convert Genepop to HZAR format. |
| genepop_ID | Add separation ("_") between population name (generated or... |
| genepop_newhybrids | Convert Genepop to New Hybrids format. |
| genepop_reorder | Return a genepop file with populatons in specified order. |
| genepop_rubias | Convert Genepop to rubias format. |
| genepop_sample | Randomly sample individuals from Genepop. |
| genepop_structure | Convert Genepop to STRUCTURE format. |
| genepop_toploci | Creates a panel of the top n unlinked loci, and exports the... |
| genepop_treemix | Convert a Genepop to input required for phython processing to... |
| genepop_unflatten | Convert to Genepop format from a flattened dataframe. |
| insert_vals | Insert values at location |
| majorminor | Function to convert allele in character format to bgc... |
| micro_genepop | Convert to genepop from micro haplo plot file format. |
| Optimfunc | Decision matrix for selecting a panel of unlinked loci by Fst |
| path_ending | path_ending |
| PGDspideR | Execute PGDspider data format conversions in R |
| powermarker_genepop | Convert Powermarker format to Genepop |
| subset_genepop | Genepop subset loci and populations |
| subset_genepop_aggregate | Genepop subset, combine, and reorder populations |
| subset_genepop_individual | Genepop remove or keep specific sample IDs |
| subset_genepop_rename | Genepop subset and rename populations |
