View source: R/subset_genepop_individual.R
subset_genepop_individual | R Documentation |
Function for the manipulation of genopop format SNP datasets
subset_genepop_individual(genepop, indiv = NULL, keep = FALSE, path)
genepop |
the genepop data to be manipulated. This can be either a file path or a dataframe read in with tab separation, header=FALSE , quote="", and stringsAsFactors=FALSE. This will be the standard genepop format with the first n+1 rows corresponding to the n loci names, or a single comma delimited row of loci names followed by the locus data. Populations are separated by "Pop". Each individual ID is linked to the locus data by " , " (space,space space) and is read in as as a single row (character). |
indiv |
vector sample IDs of interest.
These can be either the order by which they occur or the exact name of the loci
indiv <- |
keep |
logical whether to delete sample IDs specified by indiv (default: TRUE) or delete all other IDs. |
path |
the filepath and filename of output. |
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