genepop_reorder: Return a genepop file with populatons in specified order.

In rystanley/genepopedit: Simple and flexible manipulation of genomic data

Return a genepop file with populatons in specified order.

Description

Function to subset loci and populations

Usage

genepop_reorder(genepop, reorder, path)

Arguments

genepop	the genepop data to be manipulated. This can be either a file path or a dataframe read in with tab separation, header=FALSE , quote="", and stringsAsFactors=FALSE. This will be the standard genepop format with the first n+1 rows corresponding to the n loci names, or a single comma delimited row of loci names followed by the locus data. Populations are separated by "Pop". Each individual ID is linked to the locus data by " , " (space,space space) and is read in as as a single row (character).
reorder	vector of the population names in the order required. Note all population names must be included and can be determined using genepop_detective().
path	the filepath and filename of output.

rystanley/genepopedit documentation built on June 14, 2024, 5:34 p.m.