genepop_sample: Randomly sample individuals from Genepop.
In rystanley/genepopedit: Simple and flexible manipulation of genomic data
View source: R/genepop_sample.R
genepop_sample R Documentation
Randomly sample individuals from Genepop.
Description
Stratified random sample of individuals from a Genepop file.
Usage
genepop_sample(genepop, nsample)
Arguments
genepop
the genepop data to be manipulated. This can be either a file path
or a dataframe read in with tab separation, header=FALSE , quote="", and stringsAsFactors=FALSE.
This will be the standard genepop format with the first n+1 rows corresponding to the n loci names,
or a single comma delimited row of loci names followed by the locus data. Populations are
separated by "Pop". Each individual ID is linked to the locus data by " , " (space,space space) and is read in as
as a single row (character).
nsample
vector or dataframe which defines the random stratified sampling.
If nsample is an integer (e.g. 5) then nsample individuals will be selected from each population.
If nsample is a fraction (0-0.9) then that percentage of individuals will be selected from each population.
If nsample is a dataframe then the number or fraction associated with each population will be sampled.
where the first column is the population and the second is the number to be sampled.
rystanley/genepopedit documentation built on June 27, 2023, 11:33 p.m.
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View source: R/genepop_sample.R
| genepop_sample | R Documentation |
Randomly sample individuals from Genepop.
Description
Stratified random sample of individuals from a Genepop file.
Usage
genepop_sample(genepop, nsample)
Arguments
genepop |
the genepop data to be manipulated. This can be either a file path or a dataframe read in with tab separation, header=FALSE , quote="", and stringsAsFactors=FALSE. This will be the standard genepop format with the first n+1 rows corresponding to the n loci names, or a single comma delimited row of loci names followed by the locus data. Populations are separated by "Pop". Each individual ID is linked to the locus data by " , " (space,space space) and is read in as as a single row (character). |
nsample |
vector or dataframe which defines the random stratified sampling. If nsample is an integer (e.g. 5) then nsample individuals will be selected from each population. If nsample is a fraction (0-0.9) then that percentage of individuals will be selected from each population. If nsample is a dataframe then the number or fraction associated with each population will be sampled. where the first column is the population and the second is the number to be sampled. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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