parameters/README.md

In saezlab/CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Below you will find a detailed description of parameters for each of the solver { "solverPath": "solverPath", #cplex solver (binary file) path "lpFilename": "", #the path to LP file if you already have it "cplexCommandFilename": "", "timelimit": 3600, #parameter of cplex "betaWeight": 0.2, #parameter of CARNIVAL: betaweight is used to penalise for a network size "threads": 0, #cplex parameter: how many threads to use "clonelog": 1, #cplex paramter: if clonelog files should be created "workdir": "", "cplexMemoryLimit": 8192, "cleanTmpFiles": "TRUE", "keepLPFiles": "TRUE", "mipGap": 0.05, "poolrelGap": 0.0001, "limitPop": 500, "poolCap": 100, "poolIntensity": 4, "poolReplace": 2 }

saezlab/CARNIVAL documentation built on Jan. 17, 2024, 5:10 p.m.