annotation_categories: Annotation categories and resources

In saezlab/OmnipathR: OmniPath web service client and more

Annotation categories and resources

Description

A full list of annotation resources, keys and values.

Usage

annotation_categories()

Value

A data frame with resource names, annotation key labels and for each key all possible values.

Examples

annot_cat <- annotation_categories()
annot_cat
# # A tibble: 46,307 x 3
#    source           label    value
#    <chr>            <chr>    <chr>
#  1 connectomeDB2020 role     ligand
#  2 connectomeDB2020 role     receptor
#  3 connectomeDB2020 location ECM
#  4 connectomeDB2020 location plasma membrane
#  5 connectomeDB2020 location secreted
#  6 KEGG-PC          pathway  Alanine, aspartate and glutamate metabolism
#  7 KEGG-PC          pathway  Amino sugar and nucleotide sugar metabolism
#  8 KEGG-PC          pathway  Aminoacyl-tRNA biosynthesis
#  9 KEGG-PC          pathway  Arachidonic acid metabolism
# 10 KEGG-PC          pathway  Arginine and proline metabolism

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.